PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01019167001
Common NameVIT_15s0024g02000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family M-type_MADS
Protein Properties Length: 87aa    MW: 9793.54 Da    PI: 11.1573
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01019167001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF831.9e-26959151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       k+i n+  rqvtfskRr g++KKA+ELS+LCd e+a+i+fs  gkl+eyss
  GSVIVT01019167001  9 KKIGNTAARQVTFSKRRRGLFKKAQELSTLCDGEIALIVFSAAGKLFEYSS 59
                       6899*********************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006627.389161IPR002100Transcription factor, MADS-box
SMARTSM004327.8E-34160IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-25323IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.27E-25363IPR002100Transcription factor, MADS-box
PfamPF003191.0E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-253859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MAQQKIQIKK IGNTAARQVT FSKRRRGLFK KAQELSTLCD GEIALIVFSA AGKLFEYSSS  60
RLVFSSLPFL LFIHRYMNLS AFCRQS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_S2e-18162162Myocyte-specific enhancer factor 2B
1tqe_R2e-18162162Myocyte-specific enhancer factor 2B
1tqe_Q2e-18162162Myocyte-specific enhancer factor 2B
1tqe_P2e-18162162Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.147071e-82stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4296701e-143AM429670.2 Vitis vinifera contig VV78X260920.28, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010648133.11e-32PREDICTED: MADS-box protein SVP-like isoform X2
RefseqXP_010648131.14e-32PREDICTED: MADS-box protein JOINTLESS-like isoform X1
RefseqXP_010648130.14e-32PREDICTED: MADS-box protein JOINTLESS-like isoform X1
RefseqXP_003631742.24e-32PREDICTED: MADS-box protein JOINTLESS-like isoform X1
SwissprotO827944e-28AGL24_ARATH; MADS-box protein AGL24
SwissprotQ9FUY68e-28JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLD7UBC18e-57D7UBC1_VITVI; Putative uncharacterized protein
STRINGVIT_15s0024g02000.t012e-56(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24540.12e-29AGAMOUS-like 24